Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs73807207 chr5:154309518 G/A 0 492 30.3 32.4 4.87 KM Plot
PRAD rs73807213 chr5:154345416 T/C 6.59E-7 487 30.33 33.47 20.47 KM Plot
PRAD rs73807216 chr5:154348533 T/C 0 488 30.33 32.52 4.87 KM Plot
PRAD rs73809507 chr5:154303169 A/T 0 493 30.33 32.4 4.87 KM Plot
PRAD rs7389839 chr9:118220398 T/C 3.18E-6 494 20 31.27 31 KM Plot
PRAD rs73926967 chr2:47160836 G/A 6.12E-6 494 30.8 32.4 36.77 KM Plot
PRAD rs73926970 chr2:47161034 G/C 6.12E-6 494 30.8 32.4 36.77 KM Plot
PRAD rs73926978 chr2:47161164 T/C 6.12E-6 494 30.8 32.4 36.77 KM Plot
PRAD rs73926980 chr2:47165549 T/A 3.1E-6 492 30.8 32.4 36.77 KM Plot
PRAD rs73926982 chr2:47165637 C/T 3.1E-6 492 30.8 32.4 36.77 KM Plot
PRAD rs73926983 chr2:47165638 A/G 3.1E-6 492 30.8 32.4 36.77 KM Plot
PRAD rs7409047 chr19:49980475 A/T 7.19E-7 478 30.3 33.3 24.25 KM Plot
PRAD rs7411324 chr1:202690525 G/A 9.91E-6 493 30.93 29.5 27.92 KM Plot
PRAD rs742018 chr22:45604885 C/T 5.01E-5 494 31.27 32.18 24.13 KM Plot
PRAD rs74228400 chr1:93801186 A/T 3.59E-6 494 31.37 26.8 18.97 KM Plot